fmicompbio
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adv_scrnaseq_2020
adv_scrnaseq_2020 PublicMaterial for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)
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adv_singlecell_2022
adv_singlecell_2022 PublicMaterial for the "Advanced topics in single-cell analysis" course (2022 edition)
Repositories
- SingleMoleculeGenomicsIO Public
Reading of single molecule genomics data formats into SummarizedExperiment objects
- IVMC-protocol Public
- QuasR Public
This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.
- Rbowtie Public
This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.
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