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Reproducible workflows translating multi-omics data into biological insight.
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Reproducible workflows translating multi-omics data into biological insight.
40 followers · 41 following

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Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Galaxy Brainx2Achievement: Public SponsorAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Galaxy Brainx2Achievement: Public SponsorAchievement: Arctic Code Vault Contributor

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  1. plasslab/SCALPEL plasslab/SCALPEL Public

    Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.

    R 34 3

  2. rajewsky-lab/SPACEGERM rajewsky-lab/SPACEGERM Public archive

    SPACEGERM shiny app (archived, see GitLab for active fork)

    R

  3. rajewsky-lab/mirdeep2 rajewsky-lab/mirdeep2 Public

    Discovering known and novel miRNAs from small RNA sequencing data

    Perl 161 54

  4. rajewsky-lab/find_circ2 rajewsky-lab/find_circ2 Public

    Find circRNAs in RNA-seq data.

    Python 15 7

  5. BIMSBbioinfo/ciRcus BIMSBbioinfo/ciRcus Public

    An R package for annotation of circular RNAs

    R 11 6

  6. microSNPscore microSNPscore Public archive

    mirSVR-based tool to predict the effects of SNPs on miRNA:target interactions [migrated to gitlab]

    C++