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Pull requests: vgteam/vg

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Pull requests list

fix vg snarls helptext
#4956 opened Jul 4, 2026 by faithokamoto Contributor Loading…
Remove unused code
#4955 opened Jul 3, 2026 by faithokamoto Contributor Loading…
Hide unused parameter vg map --buffer-size
#4954 opened Jul 2, 2026 by faithokamoto Contributor Loading…
Allow long-read Giraffe to take self-loops/reversals between seeds
#4953 opened Jul 1, 2026 by faithokamoto Contributor Loading…
Sync vcflib
#4951 opened Jun 30, 2026 by adamnovak Member Loading…
Remove vg msga
#4943 opened Jun 26, 2026 by faithokamoto Contributor Loading…
4
Use vg WDL that gives RTG a defined memory limit
#4918 opened May 29, 2026 by adamnovak Member Loading…
2
Add --cluster-min-len option to vg deconstruct
#4903 opened May 13, 2026 by glennhickey Contributor Loading…
2
Giraffe server engine
#4879 opened Apr 20, 2026 by parsaeskandar Contributor Loading…
15
[New Feature] vg convert: add GFAz input support
#4861 opened Mar 25, 2026 by babyplutokurt Loading…
23
Add --reference-bonus to bias surjection towards reference paths
#4786 opened Jan 5, 2026 by JosephLalli • Draft
4
More-scalable reachability edge finding for surject
#4764 opened Dec 3, 2025 by adamnovak Member • Draft
Snarl child count
#4706 opened Sep 30, 2025 by xchang1 Contributor Loading…
1
[WIP] add tag for allele number to call output
#4665 opened Jul 23, 2025 by glennhickey Contributor Loading…
Keep haplotypes in vg chunk that don't extend far enough
#4501 opened Jan 21, 2025 by adamnovak Member Loading…
add --snarl-outlier option
#4484 opened Dec 20, 2024 by glennhickey Contributor Loading…
ProTip! What’s not been updated in a month: updated:<2026-06-05.